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The 11 Best Bagels in San Diego, Ranked

The 11 best bagels in San Diego — New York style, sourdough, Montreal style, hot rip-and-dip and vegan, with the exact order at each shop.

11 rankedUpdated Jul 27, 2026 Verified Jul 27, 2026By The San Diego List
NeighborhoodsMidway District & Liberty StationEncinitasNorth ParkCarlsbadPacific BeachLa JollaOceansideRolandoValle de Oro

Desperado Bagels makes the best bagel in San Diego, and it is also the hardest one to get your hands on. The bakery on Hancock Street bakes Sunday morning and sells until it is gone. The other six days you go to a coffee counter on Cass Street in Pacific Beach that carries them, and you take what is in the case.

Eleven shops, and they are not making the same thing. There is a sourdough bagel in Encinitas with a tang loud enough to start an argument, a Montreal-style one in North Park that comes out sweeter and denser with rosemary and sea salt on top, a La Jolla shop that sends bagels out hot and expects you to dip them instead of filling them, a vegan delicatessen on El Cajon Boulevard doing carrot lox, and counters in Oceanside and El Cajon that open at 6 or 7 and just hand you a warm one with cream cheese for a few dollars.

Most of these places bake a set amount and then stop. Show up in the first hours and you get your pick of the board; show up near closing and you take whatever is left, which is usually the flavor nobody wanted.

Order the bagel plain the first time — before the schmear, before the egg and cheese. That is the only way to find out which of these is your shop.

For the rest of the morning, use our breakfast and brunch guide, and for a broader pastry counter compare the best bakeries in San Diego. If the coffee matters as much as the bread, start with the best coffee shops in San Diego. North Park readers can pair Nomad and Marigold with the North Park neighborhood guide, and North County readers can plan around our Oceanside guide.

01
Our pick

Desperado Bagels

MIDWAY DISTRICT$$$NY-STYLEDAILY PARTNER RETAIL
4.5 Google (35) Verified Jul 22, 2026

This is a bagel with structure. It lands heavy in the hand, cracks a little along the crust, and the chew keeps going a beat longer than you expect it to. The everything is seasoned hard enough that you will be picking bits of it off your fingers afterward, which is the correct amount. The flavored schmears in the case are worth the extra few dollars, and the plain bagel is the honest test — nothing on it to hide behind. Buy two while you are there. One of them is not surviving the drive home.

Order this
an everything bagel plain, then the Don Poblano at the Cass Street counter
Heads up
The Pacific Beach counter does not carry every flavor every day, and the Hancock bakery sells out. Confirm stock before a special trip.
Hancock bakery: Apple lists Sun 8am–noon while Google shows a conflicting 7am opening. PorchLight Coffee, 4865 Cass St: daily 7am–1pm.
3425 Hancock St, San Diego, CA 92110Directions →Site ↗
02

New Wave Bagel

ENCINITAS$$$NATURALLY FERMENTEDMONTHLY MENU

Natural fermentation, no shortcuts, and you can taste every hour of it. The crust comes out dark and caramelized, the inside stays airy and stretchy, and the sourdough tang is loud — you will know inside one bite whether this is your bagel. The menu turns over every month, and the seasonal flavors and schmears get ambitious without burying the dough they are sitting on. Every one is rolled by hand. When the tang and that dark crust land together, it is the most alive piece of bread you will eat all week.

Order this
whatever seeded or savory bagel is on this month's board, plain, with the matching schmear after
Heads up
The menu rotates monthly, so a favorite may be gone by your next visit. Prices run high for a daily habit.
Wed–Sun 7am–2pm; closed Mon–Tue
312 N Coast Hwy 101, Encinitas, CA 92024Directions →Site ↗
03

Nomad Donuts

NORTH PARK$$MONTREAL-STYLEROSEMARY SEA SALT

Montreal style is a different animal: sweeter dough, a denser chew, an exterior that shatters a little when you bite down. That sweetness needs something to push against, which is why the savory ones land hardest and why nobody ever orders just one. The sandwiches are composed rather than assembled, and the vegan lineup is real rather than a single token item on the board. Ten years into this on University Avenue, and the bagels are still the reason to plan a Wednesday morning around a donut shop.

Order this
rosemary sea salt with plain cream cheese
Heads up
University Avenue parking is a fight, and the busy stretch backs up. Come early or plan on waiting.
Wed–Sun 7am–2pm; closed Mon–Tue
3102 University Ave, San Diego, CA 92104Directions →Site ↗
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04

Mission Bagel

PACIFIC BEACH$$NY-STYLEEARLY SELLOUTS

This is the Pacific Beach counter you can build a habit around. The crust is properly developed, the interior stays genuinely chewy, and the bialys are the reason to look past the flavors you already know you like. Breakfast sandwiches are good and they never get in front of the bagel. The people working the counter are warm about all of it, which matters more in the morning than anybody admits. Go early — the best flavors are gone long before the doors close, and this is a shop worth catching at its best.

Order this
a poppy or everything bagel with plain cream cheese
Heads up
Garnet Avenue parking is awkward, seating is tight, and a single order can take 15 minutes at the rush.
Mon–Fri 6am–2pm; Sat closed; Sun 8am–2pm
1344 Garnet Ave, San Diego, CA 92109Directions →Site ↗
05

Inglourious Bagels & Coffee

CARLSBAD$$YEASTED NY-STYLEDAILY

Open every single day, which around here is rarer than it should be. The bagel carries enough chew and enough seasoning to hold up with nothing on it at all, and the bacon, egg and cheese is the sandwich the rest of the menu is organized around. There is outdoor seating, so a Carlsbad morning here has a way of turning into an hour without anyone minding. Service moves fast early. This is the North County shop you can drive to without checking anything first.

Order this
an everything or sesame bagel plain, then the bacon, egg and cheese
Heads up
A loaded breakfast order climbs fast, so price the bagel you actually want. Waits build once the counter fills.
Daily 7am–1pm; confirm holiday hours
6955 El Camino Real, Carlsbad, CA 92009Directions →Site ↗
06

101 Bagels & Subs

OCEANSIDE$BREAKFAST & SUBSSTRONG CONSISTENCY

Ask anybody who lives in central Oceanside where breakfast happens and you get this answer. The bagels come out fresh through the morning, the sandwiches are built generously enough to make lunch unnecessary, and the counter runs on first names. Prices here feel like an oversight in the best possible way. Nobody is performing anything — you walk in, you say what you want, and you leave with a bag that costs less than you braced for. This is the neighborhood's answer, and the neighborhood keeps coming back to it.

Order this
a classic bagel with cream cheese, or the bacon, egg and cheese when you are hungry
Heads up
Toast level is not assumed here — say dark if you want it dark. Lines build at the morning rush.
Daily 6am–2pm; confirm holiday hours
323 N Coast Hwy, Ste C, Oceanside, CA 92054Directions →Site ↗
07

Marigold Bagels

NORTH PARK$$$FOUR-DAY PROCESSHAND-ROLLED

Four days from flour to counter. Hand-rolled, cold-fermented for a long stretch, boiled, then baked on a deck oven inside the El Cajon Boulevard bakery. What comes out has actual bagel texture — chew, resistance, a crust that means something — instead of a roll with a hole in it. On weekends the case widens to pumpernickel, bialys and babka, which is when the bakery is most itself. Get one while it is still warm and the four days explain themselves without anybody having to say a word.

Order this
sesame, poppy or salt while warm, plus a weekend bialy
Heads up
Bagels start at $3.50 before cream cheese. Lines form, seating is limited, and weekend specialties sell out.
Wed–Sun 7am–2pm; closed Mon–Tue
2850 El Cajon Blvd, Ste C, San Diego, CA 92104Directions →Site ↗
08

PopUp Bagels

LA JOLLA$$$HOT BATCHESRIP AND DIP

Bagels arrive hot and whole with a row of schmears beside them, and the move is to tear and dip rather than build anything. The salt one is where to start — hot, plain, nothing between you and the crust. The menu is short on purpose, so the bagel has to carry the whole visit on its own, and on Pearl Street it does exactly that. Go in the morning while the batches are still coming out, and buy one more than you think you need. That one never makes it home.

Order this
a hot bagel torn apart and worked through the schmears
Heads up
The counter shuts at 4, so this is a morning stop rather than an afternoon one. Bundles add up quickly.
Daily 7am–4pm
637 Pearl St, La Jolla, CA 92037Directions →Site ↗
09

Ben & Esther's Vegan Delicatessen

COLLEGE AREA$$VEGAN DELICARROT LOX

Everything here is vegan and nothing about it apologizes. Carrot lox is the reason to come, laid over a bagel with a schmear and treated with the seriousness the original version usually gets. This is a full delicatessen rather than a bagel window, run by people who are patient about explaining what is in what. If you are vegan in this city, or feeding somebody who is, the morning finally has a real answer here instead of a compromise, and the schmear case runs deep enough to make the choice hard.

Order this
a bagel with carrot lox and whichever schmear they steer you toward
Heads up
The popular items sell out, so go in the morning rather than near the end of service.
Daily 7am–3pm; confirm holiday hours
6663 El Cajon Blvd, Ste Q, San Diego, CA 92115Directions →Site ↗
10

Memo's Bagel Cafe

EL CAJON$BOILED & BAKEDDEEP FLAVOR BENCH

The flavor board runs long enough to slow you down: zaatar, sriracha habanero, spinach parmesan, muenster, and a bialy for whoever knows to ask. The cream cheese case goes from garlic chive to fig and goat. Everything is boiled and baked, the bagels come out fresh through the morning, and the breakfast combinations are generous the way neighborhood places are generous. Regulars get greeted by name and anybody new gets walked through the whole board, which is how a bagel counter should work.

Order this
a zaatar or sriracha habanero bagel with a cream cheese you have never tried
Heads up
Bagels start at $3 and a baker's dozen runs $20. The counter can back up at the morning rush.
Mon–Fri 7am–4pm; Sat–Sun 7am–3pm
2650 Jamacha Rd, Ste 163, El Cajon, CA 92019Directions →Site ↗
11

I Love Bagels — Oceanside

OCEANSIDE$BOILED & BAKEDOPEN DAILY

This is the one you can rely on. Boiled and baked, open every morning, with a lineup covering every classic you would think to ask for and cream cheeses made in house instead of scooped out of a tub somebody else filled. The breakfast sandwiches are exactly what breakfast sandwiches should be. Nothing here is trying to be a destination, which is the entire reason it works on an ordinary Tuesday when you have a short window and a car full of people to feed.

Order this
an egg, rye or everything bagel with a house cream cheese
Heads up
The counter slows once the breakfast rush lands, so know what you want before you reach the register.
Daily 6am–2pm; closed Thanksgiving, Christmas, and New Year's Day
3910 Vista Way, Ste 101, Oceanside, CA 92056Directions →Site ↗

Where they are

Ranked locations · exact streets
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How we rank

every place has a verified Google or Yelp listing; both are attempted, open status is checked, and evidence is dated.

Exact branches, current menus, hours, direct ratings, recent praise and recurring complaints checked July 22, 2026, and PopUp Bagels on July 27, 2026

Common questions

What is the best bagel in San Diego?

Desperado Bagels. It is a big, hard-crusted bagel with a chew that takes its time and everything seasoning laid on without restraint. The Hancock Street bakery bakes Sunday morning; PorchLight Coffee on Cass Street in Pacific Beach carries them at the counter the rest of the week.

Where can I get a New York-style bagel in San Diego?

Desperado in the Midway District, Mission Bagel on Garnet Avenue in Pacific Beach, Inglourious in Carlsbad, and Marigold on El Cajon Boulevard in North Park. Mission is the easiest to work into a weekday. Marigold is the one that hand-rolls, cold-ferments for days, boils, and deck-bakes.

Which San Diego shop has the best sourdough bagel?

New Wave in Encinitas. Naturally fermented and hand-rolled, with a dark caramelized crust and an airy, stretchy inside. The tang is assertive on purpose — if sour bread is not your thing, go to Mission or Inglourious instead. For a bagel you tear and dip rather than fill, PopUp on Pearl Street in La Jolla is the only one doing it.

Where do I get Montreal-style bagels in San Diego?

Nomad Donuts in North Park. The dough is sweeter, the chew is denser, and the outside is crisper than the New York style. Rosemary sea salt is the one to start with.

Where can I get a vegan bagel in San Diego?

Ben & Esther's on El Cajon Boulevard, where the entire delicatessen is vegan and carrot lox is the order. Nomad Donuts in North Park also runs a real vegan lineup rather than one token item.

Which San Diego bagel shops are open every day?

Inglourious in Carlsbad, PopUp on Pearl Street in La Jolla, 101 Bagels and I Love Bagels in Oceanside, Ben & Esther's in the College Area, and Memo's in El Cajon. New Wave, Nomad and Marigold run Wednesday through Sunday, Mission is closed Saturday, and the Desperado bakery bakes Sunday only.

Which San Diego bagels are the best value?

101 Bagels & Subs in Oceanside if you want a full breakfast for very little, and Memo's in El Cajon, where a single bagel is $3 and a baker's dozen is $20.

How current are these details?

Hours, menus, addresses and ratings were checked on July 22, 2026, and PopUp Bagels on July 27, 2026. Small bakeries move their schedules around, so confirm the same day before a long drive — especially for the Hancock Street bakery.

Sources and verificationOfficial pages, exact review listings, and reporting used to verify this guide.

Official and first-party sources

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